Pumpkin pecan muffins are moist, warmly spiced, and bursting with crunchy pecans-perfect for easy breakfast or cozy fall snacking just like Pecan Pie Dump Cake and Banana Pecan Muffins. The best part is that they are easy to make and hard to forget.
If you love pumpkin desserts as much as I do, then also try Starbucks Pumpkin Bread and Pumpkin Better than Anything Cake.
Pumpkin pecan crumble muffins are moist and fluffy; they come together in just one bowl and a few simple steps. Pecans add a toasty crunch in contrast to sweet and earthy pumpkin and spices; and Cinnamon Sugar Crumble Topping is so bright and fresh. Just the right balance of flavors for cool fall mornings.
Out of the fall baking recipe collection, you may also like Pumpkin Chocolate Chip Bread, Pumpkin Cheesecake with Caramel Sauce.
Why you'll love this recipe
- Easy way to use up all those pumpkins: If you have any of the pumpkin leftovers laying around the house, or actual pumpkin in the back yard, this is a delicious way to eat one - in a muffin.
- Moist, tender and flavorful: Pumpkin purée and butter keep the muffins soft, never dry. They are also amazingly flavorful with the natural sweetness of pumpkin and cinnamon.
- Crunchy streusel topping: The cinnamon-sugar crumble is so crisp and golden and creates a delicious contrast between the soft muffin texture and the crunchy topping.
- Perfect dessert: These pumpkin crumble muffins are ideal for breakfast, brunch, snacks, or a cozy dessert with coffee or tea. Crumbly on the outside and very delicious on the inside!

Ingredients
- All-Purpose Flour: The base for both the muffins and the streusel topping. Measure carefully-spoon the flour into the cup and level it off. Scooping directly can pack it down and lead to dense muffins.
- Fresh pumpkin puree: I used homemade pumpkin puree made from a fresh pumpkin. So, if you bought a Thanksgiving pumpkin and wondering what to do with it - do not throw it away! Make pumpkin pecan muffins instead
- Butter: Adds richness and moisture to the muffins and helps the streusel bake into a crisp, crumbly topping.
- Sugar: I used brown for both the muffin batter and cinnamon streusel topping. Brown sugar keeps the muffins moist and adds a nice molasses flavor. The topping looks darker because of the molasses as well.
- Chopped Pecans: Provide a toasty, nutty crunch in the streusel. Walnuts work as a substitute, or you can skip the nuts entirely.
- Leaveners (Baking Powder + Baking Soda): Work together to give the muffins their rise and light texture.
- Spices (Cinnamon and Nutmeg): Warm, classic pumpkin pie spices that infuse each bite with cozy fall flavor.
- Eggs: Add richness, structure, and binding to the batter.

How to Make Pumpkin Pecan Muffins
This is an overview of the recipe. Full ingredient list with measurements and instructions is in the recipe card below.
1. Make Muffin Batter
- In a large bowl, mix all dry ingredients together: flour, granulated sugar, baking soda, baking powder, salt, cinnamon, nutmeg, pecans and brown sugar.
- In another bowl, prepare liquid mixture by whisking eggs together until the yolks and whites are blended. Then add vanilla, oil and pumpkin puree.
- Mix it all together: Mix well with a wooden spoon.
2. Add Batter to Muffin Pan
- Prepare muffin pan by spraying it with oil, or use butter. You can also use cupcake liners instead.
- Use a large spoon or an ice cream scoop to fill each muffin cup completely full, if you want them to have the same mushroom top as the ones in my pictures.
- Fill each muffin cup ⅔ full for a normal looking muffin:).
3. Mix Cinnamon Streusel Topping
- Prepare the topping for the pumpkin muffins by mixing pecans, brown sugar, cinnamon, flour together. Then add softened butter by cutting it into the dry ingredients with the fork until you have a good crumble topping.
- Chill the streusel for 20 minutes in the fridge.
4. Assemble the Muffins
Using a spoon, spread the streusel topping evenly over each muffin. Scoop muffins in the greased or paper lined muffin pan and sprinkle with a Cinnamon Streusel topping for extra texture.
5. Bake
Bake pumpkin pecan muffins for 25-35 minutes ate 350 F. Start checking them for doneness at 20 minute mark. Use a toothpick or a knife to see if any of the crumbs stick.

Pumpkin Pecan Muffins with Cinnamon Sugar Crumble Topping
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Equipment
Ingredients
Dry Ingredients:
- 1 ¾ cups all purpose flour
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ½ teaspoon sea salt
- 1 cup granulated sugar
- ½ cup brown sugar
- ½ cup chopped pecans
- ¼ teaspoon ground nutmeg
- 1 ½ teaspoon cinnamon
Liquid Ingredients:
- 2 large eggs
- 1 teaspoon vanilla extract
- 1 cup of canned pumpkin or homemade pumpkin puree
- ½ cup vegetable oil (such as canola oil)
Topping:
- ½ cup chopped pecans
- ⅔ cup brown sugar
- 1 teaspoon cinnamon
- ⅓ cup butter softened
- ⅓ cup flour
- confectioners sugar (optional, for decoration)
Instructions
- Preheat the oven to 350ºF and line muffin cups with paper liners.
Make muffin batter
- In a large bowl, mix all dry ingredients together: flour, granulated sugar, baking soda, baking powder, salt, cinnamon, nutmeg, pecans and brown sugar.
- In another bowl, prepare liquid mixture by whisking eggs together until the yolks and whites are blended. Then add vanilla, oil and pumpkin puree.
- Add the liquid mixture from step 2 to the dry ingredients mixture in step 1. Mix well with a wooden spoon.
- Prepare muffin pan by spraying it with oil, or use butter. You can also use cupcake liners instead. Use a large spoon or an ice cream scoop to fill each muffin cup completely full, if you want them to have the same mushroom top as the ones in my pictures. Otherwise, fill them ⅔ full for a normal looking muffin:).
Cinnamon Streusel Topping
- Prepare the topping for the muffins by mixing pecans, brown sugar, cinnamon, flour together. Then add softened butter by cutting it into the dry ingredients with the fork until you have a good crumble topping.
- Chill the streusel in the fridge for 20 minutes
- Sprinkle this mixture over muffins.
- Using a spoon, spread the topping evenly over each muffin.
Bake
- Bake until the muffins are springy to the touch and toothpick comes out clean, for 25 to 35 minutes. Start checking with the toothpick at 25 minutes.
- Allow them to cool for 10 minutes, then turn out onto rack to cool completely. Please keep in mind that the larger the muffin cups, the longer it will take to bake them.
- Sprinkle with confectionary sugar (optional).
Video
Notes
Expert Tips for Success
Use Room Temperature Ingredients: Cold eggs or butter can prevent your batter from mixing evenly. Allow ingredients to come to room temperature before combining for smoother batter and better rise in the oven.
Don't Overmix the Batter: Overmixing develops gluten and leads to tough muffins. Stir just until no streaks of flour remain, using a spatula or wooden spoon. The batter should look slightly lumpy-that's the secret to moist, fluffy pumpkin muffins.
Don't Skip the Streusel Chill Step: Cold butter is key to achieving a crispy, crunchy crumble topping. If the streusel becomes too soft while prepping the batter, refrigerate it for 10 minutes before sprinkling over the muffins.
Always Test for Doneness: Baking times vary depending on pan size and oven accuracy. Insert a toothpick into the center of a muffin at 25 minutes-it should come out mostly clean with a few moist crumbs, never wet batter. Overbaking is the #1 reason muffins turn out dry.
Cool Properly Before Storing: Let muffins cool in the pan for 10 minutes to set the structure, then move them to a wire rack. This prevents soggy bottoms by allowing steam to escape naturally.
Pumpkin Pecan Muffins FAQ
- Why Did My Muffins Not Rise? Expired baking soda or powder could be the culprit. Always test freshness or replace after six months. Fill each muffin cup almost full for bakery-style domed tops.
- Why Is My Streusel Crumb Too Sandy or Dry? You may have added too much flour or not enough butter. Use softened butter cut evenly through the dry mix for clumps that stay crunchy once baked.
- Can I Make the Batter Ahead of Time? You can mix the wet and dry ingredients separately, then combine just before baking. Storing the combined batter overnight in the fridge can deflate your muffins, so bake fresh for best texture.
- Why Do Muffins Collapse in the Center? Don't open the oven during the first 15 minutes; cool muffins gradually. Test the center with a toothpick and ensure your baking soda and powder are fresh.
- Why Doesn't Crumble Get Crunchy? Use a fork to combine chilled butter into your topping until it forms pea-sized crumbs. Avoid melting the butter-it should bake into sweet, crisp clusters.
- Pumpkin Flavor Feels Too Mild Add a little more cinnamon, nutmeg, or a touch of pumpkin pie spice. Using fresh homemade puree also helps a lot.
How to Make Bakery-Style Muffin Tops
For tall, domed muffins with a golden crown, fill your muffin cups almost to the top and start baking at 400°F for the first 5 minutes, then reduce to 350°F. That quick blast of heat gives the batter instant lift.
Muffins Turn Out Dense or Heavy
Overmixing the batter or using too much flour leads to dense muffins instead of light, fluffy texture.
Pro Tip: Mix just until the dry and wet ingredients come together-no streaks of flour, but no overbeating. Spoon and level your flour; don't scoop directly from the bag.
Streusel Topping Melts or Sinks into the Muffin
Most likely because butter is too soft, or crumble pieces are too fine.
Pro Tip: Keep the streusel crumbly and chilled before topping. Cold butter pieces help the toppingstay crisp and visible after baking. Sprinkle it on gently right before putting the muffins in the oven.
Muffins Are Dry Instead of Moist
Avoid baking too long or using not enough fat/moisture.
Pro Tip: Pumpkin puree and butter keep the texture soft, so make sure to measure pumpkin precisely and don't overbake. Start checking at 20 minutes. The muffins should spring back lightly when pressed in the center.
Substitutions and Variations
- Canned pumpkin. No pumpkin - no problem. You can certainly use a canned pumpkin puree with these pumpkin pecan muffins!
- Pumpkin pie spice: Use pumpkin pie spice instead of cinnamon and nutmeg.
- Can I add other toppings? Try chocolate chips, dried cranberries, or a maple glaze once cooled.
- Gluten-Free: Use Cup4Cup or other 1:1 gluten-free flour blends for the same texture and lift.
- Dairy-Free: Swap butter for vegan butter or coconut oil for flavor and richness.
- Nut-Free Option: Replace pecans with dried cranberries, pumpkin seeds, or leave them out entirely.
Essential Tools
- Mixing bowls: Thick Glass Mixing Bowls with Airtight Lids.
- Hand Mixer: 9-Speed Digital Hand Mixer Electric with Dough Hooks and a Whisk!!
- Ice cream scoop: Non stick Anti Freeze Aluminum Scoop.
- Muffin Pan: Non-stick, warp resistant.
Storage and lLeftovers
- Pumpkin puree leftovers: Store pumpkin puree in the air tight container for up to 2 weeks in the refrigerator.
- Store at temperature: Allow the muffins to cool to room temperature and then transfer to an airtight container or resealable plastic bag. Store on the counter for 3-4 days.
- Refrigerate: Baked pumpkin muffins can be refrigerated for up to 2 weeks.
- Freeze: This recipe freezes and thaws well. Prepare muffins as directed and allow to cool completely. Transfer them to a labeled and dated resealable freezer bag and keep in the freezer for up to 3 months.
- Thaw overnight in the refrigerator and bring to room temperature before serving.
I have very good instructions and specifics on how to store muffins here.
More festive dessert recipes
If you are looking for more holiday season dessert recipes, don't miss these:
- Pumpkin Souffle with Pecans and Coconut Chips
- German Peach Kuchen Cake with Almond Streusel
- Chocolate Chip Panettone Bread Pudding with Bourbon Butter Sauce
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Theresa says
Exquisite flavor! Moist, rich in pumpkin flavor, and the topping is scrumptious!
A keeper!
Dianne says
This is a wonderful recipe! I swapped out the pumpkin for my butternut squash and used avocado oil instead of vegetable oil because that’s what I had. I also made the jumbo size. They turned out perfectly! This is a keeper recipe for sure!
Olya Shepard says
That sounds great! I like the substitution of avocado oil!
Sara says
What size can of pumpkin did you use?
Thankyou
Olya says
It was a quarter of a pumpkin and I used 1 cup of the pureed pumpkin. You can now buy quartered of halved pumpkin parts at the supermarket.
Karen Reyna says
I Believe this is great.All the Ingredients sound so good.Its's something I wouldn't ...Mind making. T.U. for sharing this T.U.
K.R. 🤔😍
Olya says
Thank you, Karen. They are delicious!